Silencing of LncRNA-PVT1 ameliorates lipopolysaccharide-induced inflammation in THP-1-derived macrophages via inhibition of the p38 MAPK signaling pathway
Introduction
Sepsis is a systemic inflammatory response syndrome which is triggered by severe infection. Patients with sepsis can suffer multiple organ dysfunction and may progress to septic shock (1). As a serious public health problem in both developed and developing countries with increasing populations of seniors and neonates, the World Health Organization (WHO) officially declared sepsis as a global health priority on May 26, 2017 (2). The pathological process of sepsis is complex and mainly involves an exaggerated inflammatory reaction. Currently, most sepsis research is primarily focused on whether better treatments can be achieved by using gene-level intervention and regulation during the development and progression of inflammation (3). During this process, numerous coding or non-coding genes display structural and expression abnormalities.
Long non-coding RNAs (lncRNAs), a group of non-coding RNA transcripts exceeding 200 nt in length, regulate gene expression at the chromosomal, DNA, transcriptional, and post-transcriptional levels. In recent years, lncRNAs and their immune regulation in inflammatory diseases have become key research foci. There is increasing evidence indicating that lncRNAs regulate immune responses by regulating protein-protein interactions or DNA/RNA base pairing, thus affecting the differentiation and migration of immune cells and the secretion of inflammatory mediators (4,5).
LncRNAs have become new regulatory targets, especially in the field of septic lung inflammation. Li et al. reported that the lncRNA maternally expressed gene 3 (MEG3) regulates transcript 4 (MEG3-4) during pulmonary bacterial infection, which allows for the binding of MEG3-4 to the microRNA miR-138, increased expression of interleukin (IL)-1 beta (1β) in lung macrophages and lung epithelial cells, and participation in pulmonary inflammation regulation (6). Huang et al. showed that the lncRNA nuclear-enriched abundant transcript 1 (NEAT1) has a higher expression level in patients with sepsis. Moreover, lncRNA NEAT1 was positively correlated with the Acute Physiology and Chronic Health Evaluation (APACHE) II score, serum tumor necrosis factor alpha (TNF-α), IL-1β, IL 6, and IL-8, and was negatively correlated with IL-10. This suggests that lncRNA NEAT1 increases the risk of sepsis and aggravates the severity of the disease, which is related to inflammatory factors (7). Huang et al. also found that lncRNA NEAT1 levels were significantly increased in the peripheral blood mononuclear cells (PBMCs) of their sepsis cohort compared to the healthy control group. LncRNA NEAT1 has exhibited high specificity in diagnosing sepsis and predicting disease prognosis, and may potentially serve as a serological marker (8).
Human chromosome 8q24.21 is home to the gene of lncRNA plasmacytoma variant translocation 1 (PVT1), which measures 1,716 bp in length. LncRNA-PVT1 is highly expressed in various tumor tissues or cell lines, as an important player in tumor development and tumorigenesis (9). The role of lncRNA-PVT1 in inflammation regulation has also been reported. Using a model of lipopolysaccharide (LPS)-induced acute kidney injury, Huang et al. showed that PVT1 regulated the c-Jun N-terminal kinase (JNK)/nuclear factor kappa B (NF-κB) pathway through its binding to TNF-α, thereby promoting the inflammatory response (10). Hence, we hypothesize that PVT1 might be involved in the inflammatory response in septic acute lung injury (ALI).
The present work set out to investigate the differential lncRNA-PVT1 expressions in THP-1-derived macrophages treated with LPS. Knockdown of lncRNA-PVT1 can play a key anti-inflammatory role through inhibiting the p38 MAPK signaling pathway, which reversely blocks the expression of LPS-inducible LncRNA-PVT1. This research could provide a theoretical basis for further exploration of the mechanisms of lncRNA-PVT1 in inflammatory responses in sepsis. We present the following article in accordance with the MDAR reporting checklist (available at https://dx.doi.org/10.21037/apm-21-1078).
Methods
Materials
We purchased 12-myristate 13-acetate (PMA) and LPS from Escherichia coli O55:B5 from Sigma-Aldrich (St. Louis, Missouri, USA), and fetal bovine serum (FBS) and Roswell Park Memorial Institute 1640 (RPMI 1640) Medium from Gibco (Thermo Fisher Scientific, USA). SB202190, a p38 selective inhibitor, was obtained from Selleck (Houston, Texas, USA). The antibodies used in this study were obtained from Cell Signaling Technology (Beverly, MA, USA). We purchased an RNAiso Plus, PrimeScript™ RT reagent Kit with gDNA Eraser and TB Green™ Premix Ex Taq II from Takara Bio (Dalian, China), and a bicinchoninic acid (BCA) protein assay kit and bovine serum albumin (BSA) from Beyotime Biotechnology (Shanghai, China).
Cell culture and treatment
American Type Culture Collection (Manasas, VA, USA) supplied the THP-1 cells used in our experiments, which were first cultured using RPMI 1640 containing 10% FBS and 1% penicillin-streptomycin, and incubated at 37 °C in 5% CO2/95% air. The addition of PMA (162 nM) was made to promote the differentiation of the monocytic THP-1 cells to macrophages (11,12). The cells were left to differentiate for 48 hours after 12 hours of PMA treatment, and morphologic examination and total adhesion to the plate were used to verify their differentiation. Finally, LPS dissolved in growth medium was used for inflammation stimulation of the THP-1-derived macrophages.
RNA extraction and quantitative real-time PCR
RNAiso Plus was used to extract total RNA from the THP-1-derived macrophages. The PrimeScript™ RT reagent Kit with gDNA Eraser was used to generate high-fidelity complementary DNA from all of the RNA samples individually. Quantitative real-time PCR (RT-qPCR) reaction samples were prepared as a mixture with TB Green™ Premix Ex Taq™ II (Takara Bio, Dalian, China) in line with the protocol supplied with the kit. Reactions were performed using a LightCycler® 480 instrument (Roche, USA). GAPDH was used as an endogenous control. The 2-∆∆Ct method was applied for the relative quantification of lncRNA-PVT1, IL-1β, TNF-α, and GAPDH mRNA. Table S1 displays each primer sequence used for RT-qPCR.
Western blot
Total protein was extracted from the THP-1-derived cells. A BCA protein assay kit was used to determine protein concentrations. Sodium dodecyl sulphate–polyacrylamide gel (12.5%) electrophoresis was carried out to separate 30 µg protein from each of the different cell groups. Polyvinylidene difluoride membranes, on to which the separated proteins had been transferred, were subjected to blocking with 5% BSA for 1 hour at room temperature. This was followed by overnight incubation at 4 °C. In the presence of the following primary antibodies: p-p38 (1:1,000), p38 (1:1,000), and GAPDH (1:1,000). After washing, each membrane was once again subjected to incubation, this time with a secondary antibody (1:5,000) for 1 hour at room temperature. Following 3 washes with tris-buffered saline with Tween (TBST), the membranes were subjected to 1-hour incubation with horseradish peroxidase (HRP)-conjugated IgG (1:1,000). After washing the membranes for a final time, we used an imaging system (Bioworld, California, USA) to detect the protein bands. GAPDH was used to normalize the relative protein levels.
LncRNA Smart Silencer transfection
We accomplished knockdown of lncRNA-PVT1 expression by using LncRNA Smart Silencer, which was synthesized by RiboBio (Guangzhou, China) and comprises 3 siRNAs and 3 antisense oligonucleotides (ASOs). Table S2 shows the siRNA and ASO target sequences. Negative control (NC) Smart Silencer is free from domains homologous to human, mice, and rats. X-treme GENE siRNA Transfection Reagent (Roche, German) was employed to transfect cells with LncRNA Smart Silencer in line with the instructions supplied with the kit. LncRNA-PVT1 Smart Silencer was transfected at a concentration of 100 nM with X-treme GENE siRNA Transfection Reagent diluted in siRNA Transfection Medium. After 48 hours, we subjected the cells to stimulation with LPS or an identical amount of medium to support gene silencing. Cells were collected 8 hours after stimulation with or without LPS for RNA isolation and protein extraction.
Statistical analysis
Data were presented as mean ± standard error of the mean based on at least 3 independent experiments. One-way analysis of variance was applied to analyze all data. Correlations between study variables were calculated by Pearson correlation analysis. GraphPad Prism 7 (GraphPad Software Inc., La Jolla, CA, USA) was used for all statistical analysis. P<0.05 was deemed to indicate statistical significance.
Results
Expression of lncRNA-PVT1, and IL-1β and TNF-α mRNA in THP-1-derived macrophages during LPS-induced inflammatory response
We analyzed the levels of lncRNA-PVT1, and IL-1β and TNF-α mRNA expressed by THP-1-derived macrophages treated with LPS at different concentrations and for different incubation times by performing RT-qPCR analysis. As shown in Figure 1A, at 8 hours after LPS stimulation, the level of lncRNA-PVT1 was increased in a dose-dependent manner. When LPS surpassed 5 µg/mL, the increase of lncRNA-PVT1 expression exhibited no significant difference, regardless of the increase in LPS concentration. Similarly, the expressions of both IL-1β and TNF-α mRNA displayed an upward trend as the LPS concentrations increased (Figure 1B,C). When the LPS concentration was 5 µg/mL, the expressions of IL-1β and TNF-α mRNA were also statistically significant compared with the control group (P<0.001). Thus, for subsequent functional experiments, we chose 5 µg/mL of LPS as the cell treatment concentration.
Cells treated with LPS for various incubation times exhibited a trend of rising and then declining expression of lncRNA-PVT1, which reached its highest level at 8 hours (Figure 1D). Likewise, the expressions of IL-1β and TNF-α mRNA at 8 hours also exhibited a marked increase relative to the controls (P<0.01) (Figure 1E,F). Therefore, in the following functional experiments, we chose 8 hours as the suitable incubation time for LPS-treated cells.
Correlations of lncRNA-PVT1 with IL-1β and TNF-α mRNA expression in THP-1-derived macrophages during a LPS-induced inflammatory response
To explore whether the expression of lncRNA-PVT1 is correlated with the expressions of IL-1β or TNF-α mRNA, a correlation analysis was performed to analyze their expressions in macrophages that had been differentiated from THP-1 cells and exposed to LPS at various concentrations for 8 hours. As Figure 2A,B shows, the levels of lncRNA-PVT1 displayed positive correlations with the levels of IL-1β and TNF-α mRNA (both P<0.001). Thus, we hypothesized that lncRNA-PVT1 might exert a positive regulatory effect on the expressions of both IL-1β and TNF-α mRNA by THP-1-derived macrophages under LPS induction.
IL-1β and TNF-α mRNA levels after silencing of lncRNA-PVT1 in LPS-induced THP-1-derived macrophages
To further confirm whether lncRNA-PVT1 has a positive regulatory effect on IL-1β and TNF-α mRNA expressions in LPS-induced inflammation, we subjected THP-1-derived macrophages to 48 hours of pre-treatment with 100 nM LncRNA Smart Silencer followed by 8 hours of 5 µg/mL LPS stimulation. Then, RT-qPCR was performed to detect the expressions of lncRNA-PVT1, and IL-1β and TNF-α mRNA. We observed a significant decrease in lncRNA-PVT1 expression after pre-treatment with LncRNA Smart Silencer, indicating that the silencer treatment was effective (Figure 3A). Furthermore, after lncRNA-PVT1 was knocked down effectively, the levels of IL-1β and TNF-α mRNA showed significant decreases after exposure to LPS compared to the control group (Figure 3B,C). These results suggested that the silencing of lncRNA-PVT1 could inhibit the expressions of IL-1β and TNF-α mRNA in LPS-induced THP-1-derived macrophages.
The effects of lncRNA-PVT1 silencing on the p38 MAPK signaling pathway in LPS-induced THP-1-derived macrophages
The p38 MAPK signaling pathway is known to be a critical player in LPS-stimulated inflammatory response. Yet, little is known about its role in LPS-induced inflammatory responses mediated by lncRNA-PVT1. To confirm the effect of lncRNA-PVT1 silencing on the p38 MAPK signaling pathway in LPS-challenged THP-1-derived macrophages, cells were pre-treated with LncRNA Smart Silencer followed by LPS stimulation. Western blotting was performed to detect the phosphorylation levels of the p38 protein, one of the critical signal proteins of MAPK pathway. As shown in Figure 4A,B, the Smart Silencer group exhibited a marked decrease in the phosphorylation levels of the p38 protein relative to the siRNA controls. Meanwhile, none of the groups showed a significant difference in the total levels of p38 (Figure 4C). These results suggested that silencing of lncRNA-PVT1 might inhibit the p38 MAPK signaling pathway, thereby inhibiting the upregulation of inflammatory genes in LPS-activated macrophages.
The expression of lncRNA-PVT1 after inhibiting the p38 MAPK signaling pathway in LPS-induced THP-1-derived macrophages
The above results suggested that lncRNA-PVT1 expression was upregulated, and silencing of lncRNA-PVT1 could ameliorate the LPS-induced inflammation via inhibition of the p38 MAPK signaling pathway. However, the mechanism of LPS-induced upregulation of lncRNA-PVT1 was not clear. Therefore, we speculated whether the lncRNA-PVT1-regulated p38 MAPK pathway could exert partial effects on lncRNA-PVT1 expression via a feedback. To confirm our conjecture, we subjected macrophages differentiated from THP-1 cells to pre-treatment with the p38 selective pharmacological inhibitor SB202190 (10 µM, 2 hours), and then to 8 hours of stimulation with LPS 5 µg/mL. The TNF-α mRNA and lncRNA-PVT1 levels were then analyzed by RT-qPCR. As a downstream inflammatory signaling molecule of the p38 MAPK pathway, TNF-α mRNA expression was significantly decreased after pre-treatment with SB202190 followed by LPS stimulation (Figure 5A), indicating that the inhibition treatment was effective. Meanwhile, lncRNA-PVT1 expression was also notably decreased when the p38 MAPK pathway was effectively inhibited (Figure 5B). These results suggested that LPS-induced lncRNA-PVT1 expression in THP-1-derived macrophages is regulated by the p38 MAPK pathway in a positive feedback manner.
Discussion
Essentially, sepsis is an excessive inflammatory response mediated by various inflammatory cells (macrophages, neutrophils, and vascular endothelial cells), as well as their released inflammation-related factors, cytokines [such as TNF-α, IL-1β, IL-6, IL-8, platelet-activating factor (PAF), and inducible nitric oxide synthase (iNOS)] (13,14). Inflammatory factors, including TNF-α and IL-1β, are secreted by activated macrophages. Interactions between various inflammatory cytokines are key to the continuous progression of lung injury (15).
Most lncRNAs do not encode proteins. They are present in the nucleus or cytoplasm in the form of RNA and regulate protein-coding genes. LncRNAs regulate gene expression at multiple levels via a variety of mechanisms, and participate in pathological processes such as tumor formation, viral replication, and inflammatory injury (16,17). A growing bank of research has revealed a close relationship between lncRNAs and the development and prognosis of sepsis (18). Chen et al. discovered that metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) is a regulator in the miR-125b and P38 mitogen-activated protein kinase (MAPK)/NF-κB pathways in the aggravation of sepsis-associated chest infection. Consequently, MALAT1 became a potential target for the diagnosis and treatment of sepsis (19). Further, Jia et al.’s work documented LPS’s effects of promoting lncRNA-CCL2 expression and increasing the release of inflammatory factors from macrophages by reducing the expression of sirtuin 1 (SIRT1) (20). Zhuang et al. found that IL-6 upregulated MALAT1 levels in LPS-induced septic cardiomyocytes. MALAT1 enhanced TNF-α expression by regulating serum amyloid antigen 3 (SAA3). MALAT1 upregulation is the mechanism responsible for LPS-induced cardiomyocyte death (21). Huang et al. found that lncRNA-PVT1 expression was significantly upregulated in a cell model of LPS-induced septic acute kidney injury. LncRNA-PVT1 promoted the release of IL-1β and other cytokines via the JNK/ NF-κB pathway, and its expression was significantly upregulated in acute kidney injury (10). However, the specific mechanisms of lncRNA-PVT1 in the LPS-induced inflammatory response remained unclear.
In this study, we established a model of the inflammatory response by stimulating THP-1 derived macrophages with LPS and compared the expressions of lncRNA-PVT1 and IL-1β, TNF-α mRNA among cells treated with various doses and duration of LPS. The levels of lncRNA-PVT1, and IL-1β and TNF-α mRNA were dose-dependently increased; lncRNA PVT1 expression reached its highest level in cells treated with LPS for 8 hours, while IL-1β and TNF-α mRNA levels continued to rise time-dependently. The above findings indicated that the upregulation of lncRNA-PVT1 expression and elevation of the levels of inflammatory mediators (including IL-1β and TNF-α mRNA) might jointly promote the LPS-induced inflammatory response in macrophages. Further investigation of the correlation between lncRNA-PVT1 and related inflammatory genes expression revealed that lncRNA-PVT1 expression displayed positive correlations with the expressions of IL-1β and TNF-α mRNA, which indicated that lncRNA-PVT1 participated in the LPS-induced inflammatory response in macrophages by upregulating the expression of the inflammatory factors IL-1β and TNF-α mRNA.
It is well established that extracellular LPS of Gram-negative bacteria exerts a crucial role in aggravating an innate immune response and inflammation. Activation of the TLR4 signaling pathway by LPS subsequently engages p38 MAPK, ultimately leading to immune and inflammatory responses (22). Therefore, the mRNA levels of IL-1β and TNF-α in LPS-stimulated THP-1-derived macrophages were determined after silencing of lncRNA-PVT1. The results showed that the expressions of the downstream inflammatory genes IL-1β and TNF-α were significantly downregulated after silencing of lncRNA-PVT1. Meanwhile, the activity of the p38 MAPK pathway was decreased, suggesting that silencing of lncRNA-PVT1 might ameliorate LPS-induced inflammation in THP-1-derived macrophages via inhibition of the p38 MAPK signaling pathway. To further confirm the mechanism underlying LPS-induced lncRNA-PVT1 up-regulation in this model, we detected the expression of lncRNA-PVT1 by specifically inhibiting the p38 MAPK pathway, and the results showed the lncRNA-PVT1 elevation in LPS-induced macrophages decreased markedly compared with the vehicle control.
By elucidating the role and mechanism of lncRNA-PVT1 in LPS-induced cellular inflammatory response in macrophages, this study has provided a promising and novel target for gene-level intervention and regulation during the development and progression of inflammation, which is an important innovation in the field of septic lung injury research. However, the mechanism by which the p38 MAPK signaling pathway regulates the upregulation of lncRNA-PVT1 expression was not clarified. Moreover, our data were based on in vitro experiments. Further experiments in clinical samples and animal models are necessary to verify our conclusion. Therefore, future studies should focus on the above 2 points in order to comprehensively elucidate the specific mechanisms of lncRNA-PVT1 in the inflammatory response of sepsis.
In conclusion, our results demonstrate that the silencing of lncRNA-PVT1, which was induced by LPS, might ameliorate the inflammation in THP-1-derived macrophages via inhibition of the p38 MAPK signaling pathway. We have also shown that the p38 MAPK pathway regulates lncRNA-PVT1 expression, possibly in a positive feedback manner.
Acknowledgments
Funding: This work was supported by the National Natural Science Foundation of China (81801945) and the Basic and Applied Basic Research of Guangdong (2020A1515010151).
Footnote
Reporting Checklist: The authors have completed the MDAR reporting checklist. Available at https://dx.doi.org/10.21037/apm-21-1078
Data Sharing Statement: Available at https://dx.doi.org/10.21037/apm-21-1078
Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at https://dx.doi.org/10.21037/apm-21-1078). The authors have no conflicts of interest to declare.
Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.
Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
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(English Language Editor: A. Kassem)